The swingarm bolt goes through the rear of the engine.
If you have rearsets with non-folding pegs, you can rest the bike on the pegs.
Otherwise I've heard of others who use a steel rod or piece of re-bar to run through the stock pegs to rest the bike on.
You'll also need to obtain or fabricate the special tool to loosen/tighten the swingarm bolt lock nuts. Refer to the service manual.